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Polymerase chain reaction (PCR)

PCR primer design

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Explore the fundamental principles of an effective PCR primer such as primer orientation, primer length, primer melting temperature and restriction enzyme sites. Then design your own primers to amplify a target region. Study amplicon to determine restriction enzyme sites and design primer extensions that can be used for vector insertion.

Learning outcomes

  • Identify characteristics of forward and reverse primer binding to DNA.
  • Determine how primer length, melting temperature and GC content influence DNA amplification.
  • Design a set of primers to amplify a sequence of interest.
  • Determine which restriction endonucleases to use for cloning a target DNA fragment.
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Skills

Designing and Planning Experiments

  • Use the key principles of PCR to design primers
  • Write DNA sequences of primers 
  • Design primer extensions

Concepts, Principles and Theories

  • How primers are affected by length, melting temperature and GC content
  • How restriction enzymes create overhang regions

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Details

Degrees

Biochemistry
Biomedical science
Biological science
Pharmacological science
Forensic science

Modules

Molecular biology & genetics

Topic

Polymerase chain reaction (PCR)

Purchase option

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